多くのtxtファイルを含むフォルダがあります。各ファイルは次の形式で存在します。
Allowed overlap: -3
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: False
19 contacts
atom1 atom2 overlap distance
:128.B@BB :300.C@BB -1.676 4.996
:179.B@BB :17.C@BB -1.898 5.218
:182.B@BB :17.C@BB -2.015 5.335
私の目標：フォルダ内のファイルを繰り返してそれらを組み合わせてグローバル出力にすることです。例では、「19（この数字はファイルごとに異なる）連絡先」の後の文字列のみを考慮して、ファイルの最初の6行をスキップしたいことに注意する必要があります。
実装に可能なワークフロー：
# make a log file which will contain info from all files going to be looped on the next step.
echo "This is a beginning of the global output" > ./final_output.txt
# that is a key phrase which is the indicator of the first string which should be taken from each of the files
key= "#any of the digit# contacts"
#now I want to loop each of the files with the aim to add all of the strings after (and including) ${key} to the final_output.txt
for file in ${folder}/*.txt; do
file_title=$(basename "$file")
# 1- print the ${file_title} within the final_output.txt
# 2 - add all of the strings from the file into the final_output.txt
# NB ! I need to take only the strings after (and including) the key-phrace
done
ベストアンサー1
3つのファイルを例に挙げます。
ファイル1
Allowed overlap: -3
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: False
19 contacts
atom1 atom2 overlap distance
:128.B@BB :300.C@BB -1.676 4.996
:179.B@BB :17.C@BB -1.898 5.218
:182.B@BB :17.C@BB -2.015 5.335
ファイル3
Allowed overlap: -3
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: False
17 contacts
atom1 atom2 overlap distance
:128.B@BB :300.C@BB -1.676 4.996
:179.B@BB :17.C@BB -1.898 5.218
:182.B@BB :17.C@BB -2.015 5.335
ファイル4
Allowed overlap: -3
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: False
12 contacts
atom1 atom2 overlap distance
:128.B@BB :300.C@BB -1.676 4.996
:179.B@BB :17.C@BB -1.898 5.218
:182.B@BB :17.C@BB -2.015 5.335
次のコードは、19の連絡先、17の連絡先、12の連絡先の出力をファイルの最後まで保存します。
for i in file1 file3 file4; do sed -n '/^[0-9]/,$p' $i; done > /var/tmp/outputfile.txt
出力
19 contacts
atom1 atom2 overlap distance
:128.B@BB :300.C@BB -1.676 4.996
:179.B@BB :17.C@BB -1.898 5.218
:182.B@BB :17.C@BB -2.015 5.335
17 contacts
atom1 atom2 overlap distance
:128.B@BB :300.C@BB -1.676 4.996
:179.B@BB :17.C@BB -1.898 5.218
:182.B@BB :17.C@BB -2.015 5.335
12 contacts
atom1 atom2 overlap distance
:128.B@BB :300.C@BB -1.676 4.996
:179.B@BB :17.C@BB -1.898 5.218
:182.B@BB :17.C@BB -2.015 5.335